NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10003967

Scaffold Ga0212123_10003967


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10003967 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29453
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (82.35%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002492Metagenome / Metatranscriptome554Y
F003336Metagenome / Metatranscriptome493Y
F016467Metagenome / Metatranscriptome247Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1000396711F003336GGAGMSVNRTAAYGMYPRNVALPEVVSALNQAGFQNQDICMVLSPAHPVATGVGDARIGGFAQEESASSARMIGWFSEFGAVVIPTVGFFIRSQAFFQALLAEQNFPALSRGARTLLGLGFSTDEAKRLGHQLCDVGALVYVSCKEGTKADWAIELLRRAGAKEASSLGMAQATQAAAA
Ga0212123_100039674F002492GAGMSSNSPRHAWQALYHAALFENDRSKVPLRIEEAEKAIVSRIRELFVTTTDHIEEDVVLDDALYALRALRSCAHSDVAAA
Ga0212123_100039675F016467GAGMMNKGIAQAPAKHLKRAFECAVRDIYQVGLTGKVSQYRTPIVQRAGTGIAASPVDAEKRALTDAAKALAQLWKVSPSR
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