NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10000972

Scaffold Ga0212123_10000972


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10000972 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)84833
Total Scaffold Genes82 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)64 (78.05%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000192Metagenome / Metatranscriptome1666Y
F002015Metagenome / Metatranscriptome604Y
F003202Metagenome / Metatranscriptome501Y
F105672Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1000097212F003202GAGGMTMRNLTTALLITFVLGAGAGFRRYENVRNAAVVRRLTDQLEQAKSEVGDATARLSEANQKLGFLEAAKARVQVTAYALTDDFGPDPLFSNNARARSAYAVPKHDLPAGQVLNVALSPMAERQLHANLNDTIVLMSKNRARRHLARFVDRTAQTETRPVVDILFADAHEARIWGRRSFYAANISQPDSPFQQR
Ga0212123_1000097218F000192AGGAGMAANQVVLYFDTQQDALLFALAASSVMSAEGPVHSNKAAVRVAEEICKASRIMTEGVLNI
Ga0212123_1000097246F105672GGAGMFAGRLTQATICALDWLAARTLSPEDMPAHPRTGRRGEGDAYCYLRRRGYTIIARN
Ga0212123_100009725F002015N/AMTNVDAASDLLKPYDARMMRCFPVSGRINHVANDDEECSRPVELDEAQSRLF
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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