NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10000952

Scaffold Ga0212123_10000952


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10000952 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)85817
Total Scaffold Genes100 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)49 (49.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000283Metagenome / Metatranscriptome1379Y
F000336Metagenome / Metatranscriptome1274Y
F026839Metagenome / Metatranscriptome196Y
F068104Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1000095210F000336N/AMPSGGKKKHKKPSRKKSELDSALDQVGDESAAAAVKEFQDLLGEAKGDTSELVRQNAEDLERRLVLLKNREIDKEDFDYFVENQKSDLRVYVDGQPAQDQERAEKLTLHVLEIAATKVVPLLIMMI
Ga0212123_1000095211F000283AGGAMNSTLVSRNVFLCAAAIFIASCGTATFTKTGSDATIESLRSFHLAFIDEFAVPGKKFNAAAFNAKVNEGNAKFQQAIADEKFTARRPVLVDLKAQFDADAAHIKSKATRGKITPALASEMKKDVNKTYDHALGR
Ga0212123_1000095230F026839AGGAMKTILMLIVGLMLAGCGSTGNHVRNRDAVDRNRYLVEHNAVDTICACP
Ga0212123_1000095233F068104GGAGGMNSLKGHLVARDRFEFSFRALVDRTVREQNREDRRLAEQRATKHQFRARNSCILDGQNYRFARRLFLFARAQF
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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