NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10000912

Scaffold Ga0212123_10000912


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10000912 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)88985
Total Scaffold Genes74 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)62 (83.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017745Metagenome / Metatranscriptome239Y
F023656Metagenome / Metatranscriptome209Y
F032360Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1000091239F023656AGAAGGMSHKTNNKEPKTRVEEFRERLNREDLERRWQLEALDHLFTEVEDHPESFHRLWIQPLVAAGLTLESALALLIEGRFLPN
Ga0212123_1000091253F017745AGGAGVSMDHDPITYHIKFEKDHANVKVTYDLSVPVGGPSLIADFQVTVDGTNLISGFLPGQTYFNGVQFHVLANPDKDATVSYSMSSNQGWDDGDEDVLRGEKIYDEADFPRD
Ga0212123_1000091267F032360AGGAGGMGETRRRFLMTLAAAASCSVATHGAVFAQVRNTKPFPTPPASAETQNPAEKEGTTLDPQSAKRAALKQNEKEFRAGVDRLFQLASELKQEVDRTVTTEVFSVHMYKRTEEIEKVAKQLKARAKG
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