| Basic Information | |
|---|---|
| Taxon OID | 3300022557 Open in IMG/M |
| Scaffold ID | Ga0212123_10000057 Open in IMG/M |
| Source Dataset Name | Paint Pots_combined assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 354848 |
| Total Scaffold Genes | 345 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 265 (76.81%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Banff, British Columbia | |||||||
| Coordinates | Lat. (o) | 51.1699 | Long. (o) | -116.1578 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000281 | Metagenome / Metatranscriptome | 1382 | Y |
| F001289 | Metagenome / Metatranscriptome | 730 | Y |
| F001412 | Metagenome / Metatranscriptome | 701 | Y |
| F002860 | Metagenome / Metatranscriptome | 525 | Y |
| F003315 | Metagenome / Metatranscriptome | 494 | Y |
| F017275 | Metagenome / Metatranscriptome | 241 | Y |
| F039020 | Metagenome / Metatranscriptome | 164 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0212123_10000057131 | F017275 | GAG | VTILAQVAPTFWNTYGAATIAFVGFLIHGLLAFGAAQRVAGQREQQWLSDQDWKKEHTAQANLRDVAIAALQAMGNSNSATVKGIQGQLILIQGELQALRNRAIRGSPESSRK |
| Ga0212123_10000057139 | F039020 | GGTGG | MTGISGTAAARAADAMLQTLGGTEVTLLFAAAGLPGDAVSQLGLVDPGVEQVSISPVMVKELTTENSGPRRRIELLAGQAAMAESVSQRNVASADVLFETALGLVYGGEVFHIEGFVVERLGGVSYLYRVAAVS |
| Ga0212123_10000057167 | F000281 | N/A | MPQSVKDRVGKLREEIAEISEANRQYLQGGKKMIGASDQERRLQRLQEIMDELKSLTDWKKT |
| Ga0212123_10000057185 | F003315 | GAGG | MSLVVKLEDDLGERSEWVMLHGVVPENGHDDFVLLSGIDPFGKTVFNHRQMGAFIKEWERAKDRVRDDTQLEAWNKVKNMAELCRDDRDLYLRFVGN |
| Ga0212123_10000057190 | F001289 | GAGG | MKNPYDVLRSKEQELLRLRKEMDALRIAARLLGAEDSRIDKSQDQPKLQLQRLVQMP |
| Ga0212123_10000057197 | F002860 | AGGGGG | MPTPEKSKLEQNPNHAAEHVASAHQILKGLQEKLGTHPELGEAITKLEMALSTLAVKTGGLL |
| Ga0212123_10000057202 | F001412 | AGGAG | MKLNNVALNALAKTVVLGIAVLLASTAFASNKGTLQVREGVEVNGQQLAPGEYQLRWDGSGSSVEVSFMKGKKEVLKTTARVITLDEASNFDSAVVDRSNGKAVVSEVRFGGKKYALAIGGTEKAEMGAGK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |