NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0212088_10341063

Scaffold Ga0212088_10341063


Overview

Basic Information
Taxon OID3300022555 Open in IMG/M
Scaffold IDGa0212088_10341063 Open in IMG/M
Source Dataset NameAlinen_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1052
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameFinland: Lake Alinen Mustajarvi
CoordinatesLat. (o)61.5637Long. (o)22.044Alt. (m)Depth (m)4
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025903Metagenome199Y
F034443Metagenome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0212088_103410631F034443N/APYTMLGDIYYVIDTNSWWQLGIVNWLIQWVQVPNGPLLTDKFFYKWGDEKNKYETIFSTLSDKYIVVNCGNLGADNQKITPRLFWVSMVGGLGTTARLRGLASNSNQSLKYTGGTGLFNLYWKDWVNWIITDRKSVKIEKQMDYIELKSIDFTKRYRMDGINYLISEVAVTLNKSSIKSAQLKCFTAP
Ga0212088_103410632F025903N/AMIDITQTANLISFAGNPVIYEACSDNFLISLGDRAYFELVVSGIDATAGHTFSLHFSDKTFVFESADFTGFEGLLFEVAYLRQTFNDFAGNIYQCFIENYDIQKYFDVTIDPVSASHRRIMLLAKHPGAEYSVVLSNNGVSGVGQGV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.