Basic Information | |
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Taxon OID | 3300022555 Open in IMG/M |
Scaffold ID | Ga0212088_10086260 Open in IMG/M |
Source Dataset Name | Alinen_combined assembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2986 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
Source Dataset Sampling Location | ||||||||
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Location Name | Finland: Lake Alinen Mustajarvi | |||||||
Coordinates | Lat. (o) | 61.5637 | Long. (o) | 22.044 | Alt. (m) | Depth (m) | 4 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F022249 | Metagenome / Metatranscriptome | 215 | Y |
F050334 | Metagenome | 145 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0212088_100862603 | F022249 | GGAG | MLKRNGEDCEHPVPNYPGLLTASEFKAYNVAVPLVAEEVRLFNERATTLSEIEKQSPGIAEQVTSQIARDLPSLTVLGKPESEWKIRHVLFKSSRSEMLFCSRDHEGEQQFGVVEKFGPQSPFARVHGDTDLQMTGNNAFVLLQNYVESERSVLQLFRKDIEATIEENLSEKFPNQNHSRVVRAISARCGSQLPVESEKEKPAKSVKIRM |
Ga0212088_100862605 | F050334 | AGG | MEFLVIMGIGTLVAIWIVANLPKSRGLHREIVSFEEKPLQTPAWRKDLSEFYSTDDFDYLRKLERHQTDPHHWPCPFPPQE |
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