NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224534_1046635

Scaffold Ga0224534_1046635


Overview

Basic Information
Taxon OID3300022524 Open in IMG/M
Scaffold IDGa0224534_1046635 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 E1 20-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)921
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004301Metagenome / Metatranscriptome444Y
F026465Metagenome197N
F066387Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0224534_10466351F066387GAGMQIQLDSPYAHDENPAALLAGAEIEAGGLHRCLKIVRLWSQSNALPQSRHDEMIEEEQRLAKLYAAILFEIG
Ga0224534_10466352F004301GGAGMTATQFSLFDARPSAATLGMEPSVNARNAKRKLDTLRKQLATAQADLEDVNYNLSIVAMHQRASREGKIDANWWDAAMRFGMLDPGEEPVYRFGSYPVKVLRWIRHLIFTLNAERRDVLSAIADLEPKVAALSQIIGNAIQ
Ga0224534_10466353F026465N/ALYDTVKKELRRMKNQAEADAAAATFREGRDILARADVRASLSTQPHPNSFFAAKGKTMADYYEFLLHNSPRGTVANTVGKLREFAAESIQ
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