| Basic Information | |
|---|---|
| Taxon OID | 3300022522 Open in IMG/M |
| Scaffold ID | Ga0242659_1003637 Open in IMG/M |
| Source Dataset Name | Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-O (Metagenome Metatranscriptome) (v2) |
| Source Dataset Category | Metatranscriptome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1858 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Massachusetts | |||||||
| Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006606 | Metagenome / Metatranscriptome | 369 | Y |
| F009711 | Metagenome / Metatranscriptome | 314 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0242659_10036371 | F006606 | N/A | RPIRSHKEKTTMKRILLILGAAVLFVNTLVVPTQVKADGGPTSTGCGSTLCKP |
| Ga0242659_10036373 | F009711 | GGAG | MTLAIVLVIAAALALMFILGVALSRSHQISAGHARQIQPIDVEAFRVLVDPAEDDYLRRRLSAAEFRVVRRERLRAMAAYIRIAGRNAAVLVRMAQGALTVGDADTAEAARRLVDNALLLRRNAAFALLRIYIALAWPNSGLAAVAVLHGYEQLNGSAMLLGRLQNPAAPVRISATL |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |