NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224542_1000005

Scaffold Ga0224542_1000005


Overview

Basic Information
Taxon OID3300022516 Open in IMG/M
Scaffold IDGa0224542_1000005 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 E3 30-34
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35467
Total Scaffold Genes74 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (8.11%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3533Long. (o)19.0466Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011397Metagenome / Metatranscriptome291Y
F020177Metagenome / Metatranscriptome225Y
F022996Metagenome212Y

Sequences

Protein IDFamilyRBSSequence
Ga0224542_100000545F011397N/AMKDFELLKRTYPVSKCERFCDGYEFIMKNSTSKERKEWNINEKELQQVIKEGEKYIYQVAKEGKEFKVMCLCFNNYEIIRKNIFKFDDD
Ga0224542_100000550F022996N/AMETIIKINILKMKEDIKAKVELQKFYKNQRKTVKIVGERKMPASEAWYKHYTNREDLRILYAAYGIARGKSFSQIENHYPEDNHPLQKYQKAIDRILEPYMYLEEVPVLE
Ga0224542_100000553F020177N/AMDNIEVIDLNNTYWDRLKGFATELRIDARWILRNNDTKKPYGSLRIASHPDLPPGYLRAIFTYVTKIKPKNKEEKMKTVEDFQMKITELEVYSISDEIKTEQKKYEAPYKELEGMFGVKIFE
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