NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222728_1003746

Scaffold Ga0222728_1003746


Overview

Basic Information
Taxon OID3300022508 Open in IMG/M
Scaffold IDGa0222728_1003746 Open in IMG/M
Source Dataset NameMetatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-19-M (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1698
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022474Metagenome / Metatranscriptome214Y
F029822Metagenome / Metatranscriptome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0222728_10037461F022474AGGAGGVKTTLFAAALVVTLTLSAAAAQKKPSQHLAGNANVQGSAAIQVPPPPCDPCVFYGGDFDPSSPNATGLSSENTLLIPGSSTYGNFNVPTGFTVTVTGVLFNLQADANFDPLQATYDIRQGVSEGNGGTDLATATVNATVAATGRSFLGLQEYTVAVNLTSPLVLGPGSYWFNVTPECLNGATDGSCSVGRMFVSNVTGRTNSIHGAGESNHEMFLNSSYFGFTWANWCDSSLGLNGQQCNGLSFGVMGTIVP
Ga0222728_10037462F029822AGGAGGVKTTLFAFAFVVALSLSAVAANTKKPAVSRQGHGNEVADPAAPPTVTPPALCSPCLFYGGDLNTSSSNAAGMSDENTLLIVGGGSTYGAVNIPAGVTANVYGILVNVQADAAFDPQTASYDIRTGVSEGNGGTSIASGSGATIVQATGRNFLGLNEYTVAVSWTTPVALTTGEYWFNVTPNCTNTLDGSCYAFRQFASNTTNLANGVHAGWQPLESMFLNSSFFGFTWANWCDSSLGFNIYQCAALSFGLRGSE
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Biomedical Sciences Research Center "Alexander Fleming"
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