NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181351_1001320

Scaffold Ga0181351_1001320


Overview

Basic Information
Taxon OID3300022407 Open in IMG/M
Scaffold IDGa0181351_1001320 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)7969
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047028Metagenome150N
F080002Metagenome115N
F085646Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0181351_10013201F047028GGAMSDLSRGATALIKNLFGGNEKERMISAGVVRTILSDMTRLYFENRAALGNGILVFDPENPEQSKYMTKTDLENDLAVAQEGMDRKAEELFSKVIKVIEKEADSDLALVAMVQRNEIAIHLIDPKEANKKIDEYSNAP
Ga0181351_10013202F085646N/AMDQTLREIKQISEALASIDTSLQLLIAQKEGKLTSAFVNKKTISQRLNVPSVTIDKLIHQGIVSGGSSGLVEGKHYCKVDPEERNSSKFLYDPHAVLQAAWKNFQNV
Ga0181351_10013203F080002N/AMAVTTYTSPAYSQNSSSELKRPCLWEDQYKIENLPAWIYTDNQPPKNIQDCEAKLSSLNYTIRDIELQIEIRELELKTGYSRHGNAFDFEKWKIGALKAKQTHLYLLNAYTYWLIKNTPRTLDTAVKLDKLITLLIEEPADFEQKATALLD
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