NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187827_10403231

Scaffold Ga0187827_10403231


Overview

Basic Information
Taxon OID3300022227 Open in IMG/M
Scaffold IDGa0187827_10403231 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_150_PacBio MetaG (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)848
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)18.2Long. (o)-104.2Alt. (m)Depth (m)150
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064882Metagenome128Y
F073657Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0187827_104032311F064882GAGMADSGFSYETLVASLSALGTSSGALISLSVTGDKNKVIPLVDYGDFSQHIFFGDAVRKFNTSLTRILSYYPIGISGTDVSSLCAENIFKVDEFKKESNGFDLWLLDKLAITGSSSSDVNAEINVIANATNQNGDLVPLVHIVRGATNSLTGSQTGVRDSVSARSVNFEVENLNVVDRTA
Ga0187827_104032312F073657N/AVVKSGKIQIREKYTDDIEVNNFDISYDSEGNFFDLDTNLLYPGIPYKVYMQLDVRGDTFFYDFPEKWDFVVGESYNTEDANPSSMAKSARSSDFDYGLL
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