| Basic Information | |
|---|---|
| Taxon OID | 3300022225 Open in IMG/M |
| Scaffold ID | Ga0187833_10002421 Open in IMG/M |
| Source Dataset Name | Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_400_PacBio MetaG (Illumina Assembly) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 19998 |
| Total Scaffold Genes | 25 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (44.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean: Eastern Tropical North Pacific | |||||||
| Coordinates | Lat. (o) | 20.3333 | Long. (o) | -107.0 | Alt. (m) | Depth (m) | 400 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002093 | Metagenome / Metatranscriptome | 594 | Y |
| F003612 | Metagenome | 477 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0187833_1000242117 | F002093 | AGGAGG | MAYDITLSAGGPANFVTPNLAHEGEGVRVDFLTLDYINSTAGEVTHPNASANTAALKLVQDAIQNQGVNILGMGVLGNSSTEQTFMVRADNLDTISSTTTVAAIQAAVRALNAMTPDKVTADISAATATDRDMSDTAL |
| Ga0187833_1000242119 | F003612 | GAG | MATPNNFKVTNAIGSTDNYAGAEVKFFHITLVEADSSVLDIRTELGYDETMHNLIRTILLRGTILYQRIDDAASGRIDISMERPGWTAATLQTAIRDMGTTVGVNNTDVSLSVVAQTELKLDNS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |