NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196901_1000312

Scaffold Ga0196901_1000312


Overview

Basic Information
Taxon OID3300022200 Open in IMG/M
Scaffold IDGa0196901_1000312 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26133
Total Scaffold Genes83 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)57 (68.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.8455Long. (o)-76.4191Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000919Metagenome / Metatranscriptome834Y
F008402Metagenome / Metatranscriptome334Y
F048261Metagenome / Metatranscriptome148Y
F068810Metagenome / Metatranscriptome124Y
F090316Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0196901_100031221F008402N/AMEKVVISTQIRIQQYESYWYTAEDTHLDVGCEGFTISYWEVENEMAAFDEEKGEKRVRHICMNEKEALAVADAIYKLFKN
Ga0196901_100031237F090316N/AMPDDLQREEELFFKALEEYKEKKSQEPKDKTTNTLPAVIAAAL
Ga0196901_100031238F048261AGGAMRCEREIMSEPLNHKLDLSKIKTLTDVKNVFECMCLYSNASEEHEKYELHKEYFTIPNDPQELKLELPRKSLEEISQEFDEKIDKLIEDTKRKFYGCKIHTESRYERALDKIFDDFEYAKKHGQFPLKFTLDYSKLTATGSNITSNFVIKSGGEEVGYYTTGNGYLRFLMDKKPTAVVRFFMNKLLGFRWIDT
Ga0196901_100031247F000919GGAGMRFRNIEFRWSKCDNKYELVKWNEDPYGLNGFKPETCYVIAFFDKGKEGYDMRTIGNRFFEDKDAWVVGKYALEFLNAIFMIEQNELNYD
Ga0196901_10003128F068810GGAGMKEYLDGVKKRAGLVILIGQMCIVMYQLSALDQRSIVVCEQRYHQLVCVEQ
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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