| Basic Information | |
|---|---|
| Taxon OID | 3300022198 Open in IMG/M |
| Scaffold ID | Ga0196905_1004508 Open in IMG/M |
| Source Dataset Name | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4959 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (33.33%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Chesapeake Bay | |||||||
| Coordinates | Lat. (o) | 38.9819 | Long. (o) | -76.3716 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012872 | Metagenome / Metatranscriptome | 276 | Y |
| F013704 | Metagenome / Metatranscriptome | 269 | Y |
| F014505 | Metagenome / Metatranscriptome | 262 | Y |
| F016957 | Metagenome / Metatranscriptome | 243 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0196905_100450810 | F013704 | AGTAG | MDFKRKMNNGQRFEINGMEFICIETTIALQTRVDGEEPDIEVAGSYYIVRNTSTGSLHKIPFQKIIDKEKEIKWKI |
| Ga0196905_100450811 | F012872 | N/A | MDLHFEGNKLYYMEKEAELFRALDHLSKYLGNQADLTDDQIWEIFHICADSAAVYRHITDYFNVLDRKILEARIDNGKLKQELYDLKKENIKLHKIVDDHIDGF |
| Ga0196905_10045086 | F016957 | AGAAG | MQLRKYLKEGRNLSDSRTAICVDVGKTGEALFKELTGALKSNLEDDKKHIDFYWGDKLVDVKGLKKMHLSGYILLEFVNVWGGNGWCSRKSKAEYIAFQFPEAFYVFRKKHLRLRAIELCEPFYKDKVERRNYIPYKDALHRWVGRWNAQDVFTYLKFEDVEDLIFEVLPYAVTNEESK |
| Ga0196905_10045088 | F014505 | N/A | MDRIGKFYEKNFKRLTGFIKEYTDGSYEIASDIVQMVFVRLLEMESEGRTNFYEEDSLNFFYVYRACINTALKYQRAKKKIHKVSIEDLHFDFHIYEPYPEEREAMEKLIDKMENEIEDLHWYDQKMINIHMNGTSMNKLHRETEIGLTSIKNTIKNGKARIYDKLLEDWQDYENGDFDK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |