NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196905_1003095

Scaffold Ga0196905_1003095


Overview

Basic Information
Taxon OID3300022198 Open in IMG/M
Scaffold IDGa0196905_1003095 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6139
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (28.57%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001165Metagenome / Metatranscriptome760Y
F001807Metagenome / Metatranscriptome631Y
F003601Metagenome / Metatranscriptome477Y
F007026Metagenome359Y
F020342Metagenome / Metatranscriptome224Y

Sequences

Protein IDFamilyRBSSequence
Ga0196905_100309510F003601AGGMTDYTDDQLLAMAMANIGEYIHDNSPQYILIEEDPRNEDDYDTWEYGTEPLPQDHTWHSTSIDVESNEVK
Ga0196905_10030953F007026N/AMEQTKKYPEISWTQNEYHQLRLALNALEAIRDRESKRHQMDEHLDGHTADVLLEVIGMLSDELDYDPTPSEPGEPPITLDEMHTVAWKEHQEMHR
Ga0196905_10030954F001165N/AMQRLQAMQLVAKMKESADKHGIGFIGGFIAPNGEKFVMSNMDEDETQALLPDNLK
Ga0196905_10030957F020342N/AMSAFTNSLNLFDRINLAACAERRASANVLDSTRWNGEYDTARLWMKYRLNKTTNYSYIED
Ga0196905_10030958F001807GAGGMTVLAIEDTSFTDTHVTVTAVVDEMRLLYRATHFEPEEWAPALCQATIELDPEEPIPLDEDGFCAYLDHLDPQWQLLDTSVGDPD
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