NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196905_1001509

Scaffold Ga0196905_1001509


Overview

Basic Information
Taxon OID3300022198 Open in IMG/M
Scaffold IDGa0196905_1001509 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8909
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (76.32%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010764Metagenome / Metatranscriptome299Y
F032252Metagenome / Metatranscriptome180Y
F083877Metagenome / Metatranscriptome112Y
F085383Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0196905_100150917F083877GAGGMTEFYVIMLKRQDGKVYADLHKTNQHIYLTIEDAEDEFNKSEHYKQYYHIVKLIASLENE
Ga0196905_100150921F032252GGAGGMKLYRYKKDGHLYTLYEQKMPYYNLVAVPYFPNQGILAKSKRNISMDDFVVVAER
Ga0196905_100150923F010764GGAGMIKISKTYHLALTEEQAKELYEILDYERKNDNLGPDRELVLVYHELKNLFDTGIR
Ga0196905_100150935F085383N/AMTALLKLHKLCILDLLIAIDEDVVDWRNYPKLWEAIQFADKTLDIWAGDNLKQMRDKLLEELK
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