NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181354_1037921

Scaffold Ga0181354_1037921


Overview

Basic Information
Taxon OID3300022190 Open in IMG/M
Scaffold IDGa0181354_1037921 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1592
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003579Metagenome / Metatranscriptome478Y
F005113Metagenome / Metatranscriptome411Y
F013396Metagenome271N

Sequences

Protein IDFamilyRBSSequence
Ga0181354_10379212F003579N/AMTIPIAPYTMGSPAQPKVGVLFEVRYIQYTDPTAVADCHLLDAEGVEIMPVGLVPATAEQCAEWTDDAAFAAVLAVNAGFELVSEE
Ga0181354_10379213F005113GGAGGMTKEEHKSAIVTQLQQQSLNLLVDSLAAALAEIEQLKAAANADKPTP
Ga0181354_10379214F013396N/AVNLKRSLLLAVLVLGLVVVLGLALRSERVLLAGLPTRVVVASEADAWTLAGPSAVVVLGTGSMAPYIPSAPAGADPLRTVSALAVLMSGASYSDIKAGALVIYVPRWAGRNVMHQAAQIDGKGWIMTGLGNKDYETKERVTAANFVGIVQRTYIWR
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