NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181353_1021278

Scaffold Ga0181353_1021278


Overview

Basic Information
Taxon OID3300022179 Open in IMG/M
Scaffold IDGa0181353_1021278 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1705
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067666Metagenome / Metatranscriptome125N
F079966Metagenome / Metatranscriptome115Y
F101033Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0181353_10212782F079966N/AMAEVVTAQGLVLAFTNASGNVYPFACTKDATISITRDFLELAPRTNGVFREYLPNRSSFSISGSGLVKMVQSNLQPITFFDNFIEGSDAAFVGYLDIIDASGNYKVYEFDCIIQDLTLNSTTSQNAGYSFTLQGTGPLTEITSVDSYTVSSGSITGRDTATFKLVAVGIDGVWYYNYTVTGTSPTFTISIGSAYNGKVVKAVYIAL
Ga0181353_10212783F101033N/AMESNFWVVLGFQTIGLAGVGIKIYTDMKVKFREHDLRLKTLEKKEDETAHQFKDIMQALNEIKLELKDKADRL
Ga0181353_10212784F067666N/AMIGELNMKPIKKGDTYVISYSFYEDQCEDTPLDVSTYSFKLQAKNTSGTVMIEWLNATFVQIDNNTRKVTLTPTQTAAYTAGEYTYELEVTISTNKYTWMQGYVEVQNQVTS
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