NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0181353_1001288

Scaffold Ga0181353_1001288


Overview

Basic Information
Taxon OID3300022179 Open in IMG/M
Scaffold IDGa0181353_1001288 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)5050
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)8
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042880Metagenome157Y
F052570Metagenome / Metatranscriptome142N
F064681Metagenome128Y
F078660Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0181353_100128810F042880GAGGMASYTTIGELIEHLKEEDSNAPIIYQYYLAEHFEISEEVFGQVAGDFDSLIPCSDSYEVISREIDSKREEVNA
Ga0181353_100128811F052570GGAGGMRKMKYKLPKGVELEILDYDAERKDRQDSAFYTWGDTSDVALLTYQGREYRVVCVGEMRILYKGEIIRYCDDLIRAGIKRDKDLSKIDDSGGEWINNSWFEVYDYGSNEYTGEVYHEVKDAIETVANWIIDEELVNA
Ga0181353_100128819F078660AGGAGGMKLTNFYEVMDHKGEVEWGGASVSEAITWFRRGLDRSILVSVWDEQSEDDFKLITDKIDVTALVLATITSERGKA
Ga0181353_10012884F064681AGCAGGVKHNLTECDNTSTAYFDECDECGELSACICLASIVDEWEIEKVGKEGESFAYRYQFKEKASDLVARFGYASTYREAMDNIAHAVKCKEVSK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.