| Basic Information | |
|---|---|
| Taxon OID | 3300022179 Open in IMG/M |
| Scaffold ID | Ga0181353_1000378 Open in IMG/M |
| Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8682 |
| Total Scaffold Genes | 25 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (92.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Michigan | |||||||
| Coordinates | Lat. (o) | 43.2382 | Long. (o) | -86.2805 | Alt. (m) | Depth (m) | 8 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006743 | Metagenome / Metatranscriptome | 365 | Y |
| F010680 | Metagenome / Metatranscriptome | 300 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181353_100037811 | F006743 | AGGAG | VRTENWQGNMRGLRLVGEGESGPVLSPYGPVRAGLTTSHRTQSQALSELLNCLEREVESLNSKYCEAYVTLVSVMEHLVRLTAIINAKDTTD |
| Ga0181353_100037813 | F010680 | GGAGG | LGVIVELSQEEVRVCATLGVERWLTKFGSVDKPNYADGKKAGRLEPELNANIRANVSEWAVARHYNLPWNVPWYPNKYHATRNKIADVGEYEVRTVRTYGAIPFWNKDAGRIIYGTKVLDDEYFSRVEVYGSFRADDFMVDQFYDEQISGWRVPVELLEV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |