NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222719_10178592

Scaffold Ga0222719_10178592


Overview

Basic Information
Taxon OID3300021964 Open in IMG/M
Scaffold IDGa0222719_10178592 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_34D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1472
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.495Long. (o)-122.0933Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008384Metagenome334Y
F013231Metagenome / Metatranscriptome273Y
F024348Metagenome / Metatranscriptome206Y

Sequences

Protein IDFamilyRBSSequence
Ga0222719_101785922F013231N/AMINQRNYQTCKLIKNRVDLYLYEMAILFANLGTDSTQEEVAEAYKREAEYIELIAELDPEKGDRLRSSY
Ga0222719_101785923F024348N/AMLFEEYYEDLTDGEANLILDIYRVIDLLVYNHEPVTLVRLGFELSINTQELSDYLPIIITILNKVEDQYAEVRQVAD
Ga0222719_101785924F008384AGTAGMPRYDKSLIEREAIISVQQGSLTNELGIFILQRCKEIAASAFVTDGNNELKQALIDAAVMRTCEKFLHYYEKGKSAANLIISIIYSTMTNKIVSLNHSDVYGQNIKGYLTYIEDGESVTKLMRYIKDDYLSEKL
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