| Basic Information | |
|---|---|
| Taxon OID | 3300021964 Open in IMG/M |
| Scaffold ID | Ga0222719_10030496 Open in IMG/M |
| Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4235 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (44.44%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 37.495 | Long. (o) | -122.0933 | Alt. (m) | Depth (m) | 4 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012872 | Metagenome / Metatranscriptome | 276 | Y |
| F013704 | Metagenome / Metatranscriptome | 269 | Y |
| F014505 | Metagenome / Metatranscriptome | 262 | Y |
| F016957 | Metagenome / Metatranscriptome | 243 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0222719_100304964 | F012872 | N/A | MDLHFEGNRLYYMEKEAELYRCLDYLSKELSEQETMNKEQLWEVFHICADTAAVYRHITDYFTTLDRLILDARIKNGKLKQEVYDLKKENARLQESLERYMDEF |
| Ga0222719_100304965 | F013704 | N/A | MNFKRKMNDGQRFEINGMEFICIETHAYFQTRLDGEESDIDVGSSYYIVRNTSTGKLHRIPFQKIIDKENEIKWKN |
| Ga0222719_100304968 | F014505 | N/A | VGNIENFYRENFKRLTGFIKQYTDGSYEIASDIVQMVFVRLLEMEGEGRTNFYEEDSLNFFYVYRSCINTALKYQRTKKRIDKISIEDMTHDQLEFEEYPEQQMAMEKLITYMEEELDEFHWYDAKMMRIYMNGTSMNKIHRESEIGLTSIKNTIKNGKARIYEKVKEDYQDFQNGDFDK |
| Ga0222719_100304969 | F016957 | GAG | MQLRNYLKDKRKLTESRTKVCVEVGKTGEALFKEITGALKSNLADDKKHIDFYWGEKLVDVKGLKKMHLSGYILLEFINVWGGDGWCSKKSKAEYIAFQFPDAFYVFRKKHLRVRAIELCEPFYKDKVERRNYIPYDQALHKWVGRWNAQDVFTYLKFEDVEDLVFEVLPYTIKE |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |