NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0222712_10220326

Scaffold Ga0222712_10220326


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10220326 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1230
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029435Metagenome / Metatranscriptome188Y
F049575Metagenome / Metatranscriptome146Y
F072285Metagenome / Metatranscriptome121Y
F076129Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_102203261F049575N/AMTKTTLSAADLMVICDTLYRSLNVVGHSKWTKETRERVLDKVTMIMEQMNAEVVGGDVEPIVVSGDDGV
Ga0222712_102203262F076129GGAGMNNPNPECHREDCQFAYGGGSTTLAYYQPTYDKNGVNTNPDRNTTTFEVSCGSCGRMWVGKTCAGETTYEEVK
Ga0222712_102203263F072285AGGAGGMKYPQSVNKSIFIREVYEDTYENLNDYVVDTMIWENRVDELHTIWCKGKDPHKEKK
Ga0222712_102203265F029435N/AMTKQELKELLTPEFLSTLHTAVECCNWDVDMIETMEFCNWCYSMGGQPGPYYDLSF
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.