NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10175177

Scaffold Ga0222712_10175177


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10175177 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1425
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001338Metagenome / Metatranscriptome719Y
F002413Metagenome / Metatranscriptome561Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_101751772F001338N/AMTTENNDRPPLTSISTNGTYRLKLIKPKFEKVKVWEDGTASARLFFVDDKGFCLTKNFSSKYGKALAMLVGKFSGKYTNEIRLDATPAEFMEYISPACGQTILVGVEVEANGEWQGKPQYKYKLTYPKGSQKPTVQDNPPSEGVPF
Ga0222712_101751773F002413N/AMTDAPTPMAAPTLVLIAGFARAGKDTLASGLLEWSTRPAEHINFADALKEAANHYMDYLGLDGNFFNDEFKVENRDFLVNAGTFARRLDKDVFARHFANWCPVMKHHDQVSPETVVCSDWRYINELRVCQDILWERGWKVRTVYVSTAGVGPANDEELDSIAEIRAAHLFDQEYIFKPNARNQIMSEGRILAKSWRL
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