NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10167716

Scaffold Ga0222712_10167716


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10167716 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1466
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003583Metagenome / Metatranscriptome478Y
F014261Metagenome264Y
F053888Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_101677161F003583N/ANLLLAVTLLTAFAGVSAFSSAYIAGYVLDQLQSTDALVMIVTDAGLKSDSADLERNMSTATLALRSVRDLGWALAVGCLGVGVAVFLRSRRQNA
Ga0222712_101677163F014261GAGGMPFSATNTTHMKSLIALSFLIIFGWLAVVTFYGPELARAINGPEPVKAKAVRSHR
Ga0222712_101677165F053888N/AMNQEPTDIITVGDRPIRLSRPVLPHAARRLAETLPQLNALNTAGKSQADAATALGVSIGAVRTWIALAGLSWSNLNRRGPYAKRKK
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