NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10163137

Scaffold Ga0222712_10163137


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10163137 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1492
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F007691Metagenome / Metatranscriptome346Y
F021535Metagenome / Metatranscriptome218Y
F025737Metagenome / Metatranscriptome200Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_101631371F025737GGAGMKPDDKDKLNKCLDILGETDLGLSLVWLWTWSTIKGFLEDSSGDWTLVATEDEMWDH
Ga0222712_101631372F000263AGGMDGYMEDIGLPPHLQRMVNAGCTGLDIMHGELKNLMLIAEQQLAEAQAIEDESEEAMDSMERTRCEGALDTLAELYKLTYDLSFAIGAKNEA
Ga0222712_101631375F007691GGAGMKNEDKMNPIIRKPYTADELIHEIYEDNYSHLEFDENMGGEDCDCHIHITLNTMAKYLGIEVG
Ga0222712_101631377F021535N/AALIKLSSQYPTLLFTLSYEEETGWGGELEILRGVVISESEYENMCRDCDATDQMEFCEECEETICGNCNWLGEADLDAVAKCQTHKIYLDTKVPEYRKVEQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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