NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10084681

Scaffold Ga0222712_10084681


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10084681 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2256
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002707Metagenome535Y
F048999Metagenome147N
F054866Metagenome139Y
F093536Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_100846812F048999N/AMLFNKGLKMLTITLHQKTDNDGWQTIKSLPIDSAQWCKIDRSWIDTLMQSGSMVITIGHTMYSIDKN
Ga0222712_100846813F093536AGGMQTSSNNFHSMRGHVADGCIIVAPSGKQFTLKNTLKGWIVYGADNLPISGHLPSAYDVEYFVVNGLQNS
Ga0222712_100846816F054866AGGMPKYTITHGSIAAVQYVTLPDGDKVIVTDARDGSEIELPKLPLEVQTAVNRQFGTIFALPYDDRQGFIDNSISFEVEVTE
Ga0222712_100846818F002707GAGGMSQIEALTQCLVLALTAPTDQKAQQAAQLAEQIAHGLTKKQVNQCKQAAIKLWGEQ
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