NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10073890

Scaffold Ga0222712_10073890


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10073890 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2454
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003690Metagenome / Metatranscriptome473Y
F005531Metagenome / Metatranscriptome397Y
F019325Metagenome / Metatranscriptome230Y
F024319Metagenome / Metatranscriptome206Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_1007389011F005531AGAAGMTITYTLWQGSQLLAVNQKASKPEEILAVIKELEKLGKGFTYNIREVEVNK
Ga0222712_1007389012F024319N/AERITNMTNRIWESRNDYLTPSHYVACSNGCGRVTAWTLCVMCGGNYATHALVNVR
Ga0222712_100738907F019325AGGTGGMTTLNETLFSTIVHEYHNGGVKSAYGLDTYTRKELLRFLFASKGCNCINCLDKENN
Ga0222712_100738909F003690AGGAGMTISGFELIVSNEYGLELDSFLGSLYLPWHTIILTALAVISYKVYKRFYK
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