NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10050962

Scaffold Ga0222712_10050962


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10050962 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3093
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F006385Metagenome / Metatranscriptome374Y
F007263Metagenome / Metatranscriptome354Y
F021757Metagenome217Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_100509624F000447GAGGMGYVEIFRIDNDGAGWIDLSQANADELFNLEVGLLNEGALFTTKEAE
Ga0222712_100509625F007263AGGMNTQYIDQNEFYLIKDEMRFCCDESQFKYVCKSHGESMGCYFCEFDYSTDCEEQH
Ga0222712_100509626F006385GGAMILDSGTLIAIVIALAGSLGMMIAFWNRNMQLEKEIRRLQIALRTERLKK
Ga0222712_100509627F021757GGTGGMMTRKDYVATAQILSSYKDLIADEFTFHDLVDDFGSMFEADNPKFNFETFRKACEQ
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