NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10028175

Scaffold Ga0222712_10028175


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10028175 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4497
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003080Metagenome / Metatranscriptome508Y
F023844Metagenome / Metatranscriptome208Y
F064724Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0222712_100281752F003080AGGAGMTTAKDLTNQLIERAKNLKEFVVRREFDHIPGGVVKYNIQHTQGEMAKIFVPALTQHEAEEMVDEWFNEDEEL
Ga0222712_100281756F023844GGAMKAQTPARGVLIVNEWGASKMYKAVCECGNDDCTHTIDVEAEDTGVTVTIYTKTRTNFWSKNRWQHIWQLLTKGYTDYETCIVMNKQVALNYASVLQSAVEDVEEIRKNNVKNKSS
Ga0222712_100281758F064724GAGMTLWQKVKDFWIRSYTSDRRAFYYETISSACVFVSMTWISLTAQHPPMHLIYPISFVGAVFSIASFTRRGAGWPLVMTCYFACLHVFGFGRAMGWY
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