NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10003366

Scaffold Ga0222712_10003366


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10003366 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17477
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (15.38%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045745Metagenome152Y
F072346Metagenome121Y
F097337Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0222712_100033661F097337N/AMNVSEAIEKIKVMLADNAVEQTEEIAPEPATQLVFETYDLKDGSKIDLSALEIGADAMLVDDSGNSVSAPDGEYELADGTMMTVVGGKVEGIETPQAEEPTSEEAPMEADSQFDEMNATITYLQAENEALKNKLGELESKFNQGFSEMLSVLEGFSKTPVADPIQNPKNNFRIVEPKADKIERFLERVKTLN
Ga0222712_1000336620F072346AGCAGMSDNYKMAIHWITMRLQRPTIQVVIDGATYLDLNYSLEINLNRMKNQNGSSYPAYRQTKKIKDYLELRGI
Ga0222712_1000336623F045745N/AMKRKLIYGTAIVLICYAYYYALKNKQTIEKKSVNVKDWGIVTQEDIYTDTIDLSLYTSHGRLKYNKNDN
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