NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222712_10002660

Scaffold Ga0222712_10002660


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10002660 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20172
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003112Metagenome / Metatranscriptome506N
F025460Metagenome201N
F030376Metagenome / Metatranscriptome185N

Sequences

Protein IDFamilyRBSSequence
Ga0222712_1000266022F003112N/AMWLTNLSLRFLMTGQEYACFKEALKFAVENNNMVKETKYIGKVKHLLSVNRSIKRIVEEGRDREEVTDAVVHLAVSLRYLEGKGRES
Ga0222712_100026606F030376N/AMLMASVMAEDDDGDAADFVGAVLKRNGFSCGRGCVISENGGMAYSSSSGRSIISTEGFYFKSGSSVVGKDETFISKSRNFFYGTSATIKAGSAYMNGDAVWVGSQEEDND
Ga0222712_100026609F025460AGGAGMAVLDVPELMNMFRQDELQKQAVAEAQRKQALEERAMALKEQPDVNFSFEKGGLKVKGKLKDLPALSQDPAFAPYLAGIGSTISNEQSLQNEDIETQRAELSDRLKDLQKKRVKQEIEIAKGDRRTFAMEAGLGLIGAKPRADVLKDIEAEAGVYKNKLAELGFNRQGGQMETNVPDYKSEAMPLQATPQAAPRVAPETPAQAPAQPEAPKNFKSLQEAKAAGVKPGQLIYINGKPGRLQARQ
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