NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0222713_10289253

Scaffold Ga0222713_10289253


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10289253 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1049
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002598Metagenome / Metatranscriptome544Y
F006744Metagenome / Metatranscriptome365Y
F029434Metagenome / Metatranscriptome188Y
F045755Metagenome / Metatranscriptome152N
F097310Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0222713_102892532F029434GGAMNKYTFGVWLDIDAEDEDMALSLFDSVVKNAFVSESYCFEWKEVANV
Ga0222713_102892533F045755GAGGMSEIAGMWICDNCDTLAIVSVETDTILITQCKCVTNERETNE
Ga0222713_102892534F097310GGAMSKMKQLLDEIINCDLCNGKGWQFFGNAEEYDVESCECNPNELEVNY
Ga0222713_102892535F006744AGGMNLDEFKKHVLATREASKAEALSVLSATITIQPNERENLK
Ga0222713_102892537F002598AGAAGGMATKLYTIESLLVGKNYRSNSRHFEGEIISATPRPEIWYGEKTEAYLIEINTRSLRNKFATIAVKVGE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.