NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10175003

Scaffold Ga0222713_10175003


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10175003 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1458
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001855Metagenome / Metatranscriptome626N
F023354Metagenome / Metatranscriptome210N

Sequences

Protein IDFamilyRBSSequence
Ga0222713_101750031F023354AGGAMPLEVHYTNHKAWNANTKSIDPTIRKEADEIGHFLMTIGISEISEKTIDEVVIRKLILDQFYPSTGEQYNKTPKQWREVFARHMGLNIQGRWASNETRWKFTSRHAKSMMHDIVHKVLREEDS
Ga0222713_101750033F001855N/ALTNERNTVMQPLRKDHVDHYKDFVRDEFSLASNRVEREISQQAQDKVEEVGDKFATVIHKNLPNLIKDMAKKEKALRDFQNKKLSMEHDLRVEAQKIADQITEIFNNIKKRNKWDMQNINININDDNDAVDYITKKIKKACYEEAEVHARAQHKLYHALENKKKKCLNILYTGSHIQPTLVELQKEMATANIQLDLPNSLLALPSK
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