NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10173013

Scaffold Ga0222713_10173013


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10173013 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1468
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001019Metagenome / Metatranscriptome804Y
F003603Metagenome / Metatranscriptome477Y
F024786Metagenome / Metatranscriptome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0222713_101730131F001019N/AKMTHYEPSLEILEVNYSCSPGGIDTFEVYDKSEIEPVQLPIFETESLTEAVMFCYNLGKDFIVRTYAEWESRELASL
Ga0222713_101730132F024786N/AMRNGRVESLPVYRVFGNKYQNYYTILDAADEFQAVDLANALPETEWNSIPTDDVIEATDVYLNEDTSYNVQLNI
Ga0222713_101730134F003603AGGCGGMKTKEHQIGELLANSVEDHFFNPAALGRYLAEQPIYTIDRVMEVVAWIIEKQAERYRREVANDGTVCEGLIIADMLDKMIDKIKVSNDLKSVQLPITPKERGEFVKSLPETKEQNYRYSWLHDTDNRTKVTIDHPFI
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