NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10160232

Scaffold Ga0222713_10160232


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10160232 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1542
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031764Metagenome / Metatranscriptome181Y
F034567Metagenome / Metatranscriptome174Y
F082590Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0222713_101602321F031764N/AKKIKVMQNTHIQTAIQKVSTSFPSLFSREDVIKLLMDLSADMQDEAPKPKIDLDTLITTFRQVLSEKDWDNVVDKDEVELSMGYDNKVEVDRVTIDEDFLIGEVVDALEAVYNALDEEAN
Ga0222713_101602323F082590AGGAGGMIFSETITEEQYQRLTRLPYERKPYHPSEIQSSINFNELHESIRGIVAKLPVVQMLTSFFDSTLDGGQQFYLMTYKEKVFLLDTQGYNYARYVIQLKDLVVMEREDPAETMLMKAHPGSVETVIDILNYMEVDGETMEFILNQTGMKGQMLRQLFLKAHKDIIRDLSEERKQLERTI
Ga0222713_101602324F034567AGGALKELFNYYDYVNHYGNRMFAIAGVNAMPARYSSILFTGSYEECMQRLNPVGLEGSFEDFQNKVAIPK
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