NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10101603

Scaffold Ga0222713_10101603


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10101603 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2060
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001129Metagenome / Metatranscriptome768Y
F004519Metagenome / Metatranscriptome434Y
F014844Metagenome / Metatranscriptome259Y

Sequences

Protein IDFamilyRBSSequence
Ga0222713_101016031F004519N/AMATFRKYAFPKQADADKVLALCTGTTAAVALGVLDGLVCYDILWEADPPKEAAPYETWPEPCGVHSFLGWD
Ga0222713_101016033F014844N/AMLIGYGYGYPTNMLIGGLAAGVWGAFNARATADGATAAEAAVNACLFTRFAAIFNF
Ga0222713_101016034F001129N/AMLGQGGTMEFVDAAVTGKNYDFLVVNAAATFTTLTGSGSENLLTAYALTSKSVSAGIVISGRNGGKITAVTPSAGSVIGYTFL
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