NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10054316

Scaffold Ga0222713_10054316


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10054316 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3041
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011666Metagenome288Y
F038240Metagenome / Metatranscriptome166Y
F056612Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0222713_100543161F011666N/ASYFSEVATAKMLDEWLKQGDIKGIYNAAILFNTMLHQQRTMTKWLAGEAARNLGRPELADEMLQQAISQPE
Ga0222713_100543166F056612N/AMSDFESAFDAKFTLFDVKEKKSDRAPDKTGSLELELSEAMKLAEYLTAHPGEDGYGGKTVIKIPVSAWNQRSQSGTDYISGKLWAKKPERSGPPPF
Ga0222713_100543167F038240N/AMATPAGNKMRVQVLLDPEALVMLEREVQLRYNTAHRVTVSSLANEIIKSHYAILDPQHE
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