NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10049987

Scaffold Ga0222713_10049987


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10049987 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3201
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001507Metagenome / Metatranscriptome681Y
F009531Metagenome / Metatranscriptome316Y
F034902Metagenome / Metatranscriptome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0222713_100499872F001507AGGAMKQTFKPYTIDELVTNIYEDNLDHFEFIENMNGGDCDCALHNTMNTILKYWGE
Ga0222713_100499873F009531GGAMTLKVEIYEMEYSVSPGGVDCWEVNVQGYGTSRCVSDFDTAGQALNWVVDQYPDKMIELTVTSLPAYEKEYA
Ga0222713_100499876F034902N/ATAIAIQMATQEAVTDESVMVMASALYHNRNEMTNDEFAQAMFRYSAHLSAMTATLVTHACLTESQINDMLETIKEMDSMGKGIE
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