NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10043963

Scaffold Ga0222713_10043963


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10043963 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3468
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001531Metagenome / Metatranscriptome676Y
F003658Metagenome474Y

Sequences

Protein IDFamilyRBSSequence
Ga0222713_1004396311F003658N/AMLDLRGEPITVCLCGSKMWIITVVWDEETRAVGWYDLRQECKLCGAIATAPTEID
Ga0222713_1004396312F001531GGAMNWERIERWQYVVDAVAVEYSRKFDMVEIEDLRQTLYQWFAEHPKKLDEWEAKGEKDAKNLIYRSLRNQALDYCQKWKAKSVGYDVSDVYYYNNEIVEALLTPVLRSEFNVAHKLNLGRVGRPSAPSEGGNLMAMMVEIDYVYWKLGKDDRRILFMRHAEAMDFKEIANLLALGSEDAARMRHKRAVNRLIRKLGGFRPFPDYDYPDKEDEIED
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