NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10023797

Scaffold Ga0222713_10023797


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10023797 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5074
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000962Metagenome / Metatranscriptome820Y
F002455Metagenome / Metatranscriptome557Y
F009264Metagenome / Metatranscriptome320N
F090286Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0222713_1002379715F002455N/AVPLQTNTANMTDNRTYYYDISGKMMPDYESMAAYLLDEGVLFTTSAIDRCTQKECLGLCVLINDYFIPGSDAESITYNELPKLYELYKQKQWDGASQFVADKRGIPNIYWKDKGSAFQKKLDLL
Ga0222713_100237972F009264N/AMRAYLEFSFIDQEIDHLDKIGFGAKIIDAYEMENGFVAVVVDWNSKIDSHKLKYASQGCVTYSSDKIVGVELEFRDYPYKIDDCQMYPRISVELDYDDFNKKMDYVCFQNLKYQAVVYFAPDSWNCSRNSKKIKF
Ga0222713_100237977F000962N/AMNIHAPEELKNKYPQYEFRGKRREINDRIVIEAYNPVTEQTFYYSFEEDFFWMAGQIPDYKLQKVN
Ga0222713_100237978F090286GGAMNILNIFKKKPSEPKTPKIETLLPEQHYVKISLEIEYLLGKQLYIYTSNYVVTCENEQMFNEGKEKQSKIFSAIIKDIHEKLDDKSSDYVRVGESMLLKKSDFVNARIVYNYKKTNEHSR
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