| Basic Information | |
|---|---|
| Taxon OID | 3300021962 Open in IMG/M |
| Scaffold ID | Ga0222713_10019240 Open in IMG/M |
| Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5781 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (14.29%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 38.06 | Long. (o) | -121.8 | Alt. (m) | Depth (m) | 12 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000957 | Metagenome / Metatranscriptome | 821 | Y |
| F001338 | Metagenome / Metatranscriptome | 719 | Y |
| F015597 | Metagenome | 253 | Y |
| F058813 | Metagenome | 134 | N |
| F065732 | Metagenome / Metatranscriptome | 127 | Y |
| F098917 | Metagenome / Metatranscriptome | 103 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0222713_1001924014 | F000957 | N/A | FQHLDGMLALLSELYEINERIMCGDIVSAKAAIASTRMKKLLNHYHEALSEDGAEAITLDVYVAAGGWVGLTYSYQLSDGFVITGSQTPRRV |
| Ga0222713_100192402 | F065732 | N/A | MEALDPETIAWGKRIGISPERLAFLAACPKFTRTGRNDKPAYIKTENPNHHLQKLGACWWLRIRRRKTDIIHNLGKDLDTARKHRDEMLAAYDAGKPIPHLDS |
| Ga0222713_100192403 | F058813 | AGG | MSNMSAPTLVLISGFARAGKDTLATGILEWARRPSRKTNFADYLKDAANDYLLSLNLEGNFHDERFKVLHRDFLVAAGKLARSLDVDIFAKNLANFCPIRMSPDDLAPETVVCSDLRYANEVAVCQDTLHDLGWRVRTIYVATAGIGPANQEELDSICEIREKHAFDLELTFAPNSRNTIMQEGRYIAKSWRL |
| Ga0222713_100192405 | F001338 | N/A | MEPNNDRKPLKSIETAGTYKLKLIKPAFDKIRQWEDGTVSCRLFFLDDQGNCLSKSFSSKWGKPLAMLVGKFSGKFTEELRLDATPAEFLEYITPACGKTCLLGVEAEPSGEYNGKPQYKYKLTYPKGSQKPVVNDLPGPDEVPY |
| Ga0222713_100192407 | F098917 | N/A | MTNREYLRNILGQLAGEVQALRPASHDARGVQSDDLQSLHDAINAAAAELEQLDVENIEEAYHIKPLYDRIKAVVAHERVLRNQLDRVALAADNAIDLCNLLSAHVEEHGPNDDDAAL |
| Ga0222713_100192409 | F015597 | N/A | MSKPSDDFDPFDPIAGAMRAMHQGNMLAAKDARIKQLEERLEGMREAGDQLWYCVRHAQRIHADELIDAIEEWQEARNHG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |