NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10006942

Scaffold Ga0222713_10006942


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10006942 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10699
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (21.05%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008080Metagenome / Metatranscriptome339Y
F011485Metagenome / Metatranscriptome290N
F060851Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0222713_1000694217F011485N/AMIKSFKLFIVSILASAAVFAADTESPIKASINAGYNNHYIVNGLAKTGGQGFAGFDIGSTYFGVDAYVGGVILPDANNIDESHWNVGVGKGLKITEKFSLRGDLQVLRHQSSIVGGRNSIELAPKIALVNPYLTPYIRGSHDFNLKQSGYIVGVERPTDVFGWVTVTPAVEYGKFTDYDVVAAKVGVSRTFFNHLTPYAEVGWYDNNFSASKYKFASQEFSGDIVATAGVRWNF
Ga0222713_100069425F008080N/AMLKIKIWMRGTFEYSQDTIPGPTEDQTQDQFEESFIESDECYWGGEVYETCPYFDNDGRDSIDVYLGGKNNIANEEEPIFTFSDWNEFKFEEGGGCNYVPQAPDKVGEVNIWWSHDMKFNHIYYWENVTEFDPKKITIQYGTNQKDQRYLEEIYYDGEPPDDYHDHGDTGYGYNGPEFVYHPDQKFAEEDED
Ga0222713_100069428F060851N/AMKAILEFNLPEDQRQYEIANQAYDMFAAVAHFEDRLRSYQKYGHEFKTAQEAVEAIRALLHEELNIRRINIHDC
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