NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222713_10000866

Scaffold Ga0222713_10000866


Overview

Basic Information
Taxon OID3300021962 Open in IMG/M
Scaffold IDGa0222713_10000866 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_649D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34754
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (22.22%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.06Long. (o)-121.8Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014132Metagenome / Metatranscriptome265Y
F045745Metagenome152Y
F081033Metagenome / Metatranscriptome114N
F097337Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0222713_1000086632F014132N/AMQIDKEELHWLYMEWVKRVADECDWKTHFGTLEIVNAIANILENNPQLINNNVKDN
Ga0222713_1000086633F045745N/AMKRKLIYGTALAFICYAYYYAIKNKEKIEIKSEPKWVFGISEFEDIYTDTIDLRLYTSHGRLKYNIKENANR
Ga0222713_1000086652F081033N/AMIVFIEPIKGVREIADRVEIKVVNYALQNPEQTLYFKLMSQFNPMIEEGNLIIPEPIVAQWGVDDSFIVKWALETLGLEKKKIVPLEETLEEEVAPEIEGE
Ga0222713_100008669F097337N/AMNVSEAIEKIKVLLADNTAEKPNEIASEPATQLIFETYDLKDGSKIDLSALEIGADAMLVDESGNSVSAPDGEYELADGTMITVVGGKVEGVETPQAELPTSEEAPIEADSQFDEMNATITYLQAENEALKSKLVELESKFNQGFSEMLSVLEGFSKTPVADPIQNPKNNFRIVEPKADKIERFLERVKTLN
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