NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10349479

Scaffold Ga0222714_10349479


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10349479 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)795
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017294Metagenome / Metatranscriptome241Y
F043291Metagenome156N
F083939Metagenome / Metatranscriptome112N
F095171Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0222714_103494791F083939GGAGMDADYIINSVKQTSETLYREPQIDLAERLLYRIQMLEGHIRVLVNHIDNARDEIKTLQTELIA
Ga0222714_103494792F095171GAGGMRNRTKFPRTFTEAFPNSLENGACIEIHVAQLTLADKIVRVVSLIALIVLALDCFIWRP
Ga0222714_103494793F043291GGAMKNLTYTTEVHSLDYGYLTVEFDYFESDDSVGLSETYDWFAYTTEAFEDEPAGTEVTYELTAADQASIYAQIKKHHIAMIEDFHA
Ga0222714_103494794F017294N/ADKSGSGWTSKTACGRNILRTPMSAKWEDFKQENPKYRCVKCVASKQFEVNTKMDARKS
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