NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10074410

Scaffold Ga0222714_10074410


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10074410 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2237
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002413Metagenome / Metatranscriptome561Y
F004790Metagenome / Metatranscriptome423Y
F025265Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_100744103F004790N/AMETLNPETLAWANKVGLSPDRVAFLLACPKFTRTGRNDKPAYIKAENPNHHLQKLGDCYWFRLRRRGKDIVENIASDLETARKRRDEMLAAFDAGKPIPYLSSRQ
Ga0222714_100744104F002413N/AMAPPTLVLICGYARAGKDTLASGLLEWANRPAEHINFADALKEAANHYMDYLGLDGDFFKEDFKVDNRDFLVHAGKFARRLDRDVFARHFANWCPVMKHADQPSPETVVCSDWRYVNELRVCQDILWEKGWRVRTIYVATAGVGPANDEELDSIAEIRASHLFDQEYIFKPNARNQIMSEGRNLAKSWRL
Ga0222714_100744105F025265N/AKPLAMLVGKFAGKFTEEIRLDATPAEFLQYIEPACGKTCLIGVEAIPNGEWNGKPQFKYKLTFPKGSQKPVVQEAPPENPPF
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