NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10033274

Scaffold Ga0222714_10033274


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10033274 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3796
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026860Metagenome196Y
F058813Metagenome134N
F065732Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_100332742F026860N/AMRRFDPLALIKALRSEGDIPAPKGWFTVEQIREELRMAHTRNASSRALDLHRRGLLERQPHQFKAKTGQCHMAYVYRPVPPYRTIAEAATRVFEHQEEIVPKGWVRIVDVAVQLKLSDVSVRSRIARAGLKPKYFKTRRGIIGIHRNAYYLKSAVMALFR
Ga0222714_100332744F065732N/AMEALDPETIAWGQRIGISPDRLAFLAACPKYTRTGRNDKPAYIKTENPNHHLQKLGACWWLRIRRRKTDIVHNLGKDLETARRHRDEMLAAYDAGKPIPHLQSK
Ga0222714_100332745F058813AGGMSNMSAPTLVLISGFARAGKDTLATGILEWARRPSRKTNFADYLKDAANDYLLSLNLEGNFHNEEFKVRHRDFLVAAGKLARSLDVDIFAKNLANFCPIRMSPDELAPETVVCSDLRYANEVAVCEETLHDLGWRVRTIYVATAGVGPANQEELDSICEIREKHAFDLELTFAPNSRNTIMQEGRYIAKAWKL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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