NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10023332

Scaffold Ga0222714_10023332


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10023332 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4771
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002827Metagenome / Metatranscriptome527Y
F042880Metagenome157Y
F052570Metagenome / Metatranscriptome142N
F078660Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0222714_1002333211F002827AGGAGGMNKEYYQAKADLCRDLFIKQVGEGDSKEASHNLIRMVNALNQINLINYKEEKGNEAS
Ga0222714_1002333212F078660AGGAGGMKLVNFYEVMDHKGEVEWGGASVSEAITWFRRGLDRSILVSVWDEQSEDDFKLITDKIDITAIVLATITSEREKA
Ga0222714_100233328F042880GAGMSSYTTVGELIEHLKGEDLSAPIIYQYYLSEHFEISEEVFAEVARDFDSLIPCSDSYEVINGEIAKKEREGANA
Ga0222714_100233329F052570GAGGMRKMKYKLPRGVKLEIDDYDAERKDRQDSAFYTWGDSHRVATLTYKEREYYVECVGEMRIIYKGDVLRYCDRLIKAGIKNDKDLAKIEESGGEWINNSWFEVYDESSGEYTGEVYHEVKDAIETVANWIIAEKEEANA
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